Title An AsCas12f-based compact genome-editing tool derived by deep mutational scanning and structural analysis /
Authors Hino, Tomohiro ; Omura, Satoshi N ; Nakagawa, Ryoya ; Togashi, Tomoki ; Takeda, Satoru N ; Hiramoto, Takafumi ; Tasaka, Satoshi ; Hirano, Hisato ; Tokuyama, Takeshi ; Uosaki, Hideki ; Ishiguro, Soh ; Kagieva, Madina ; Yamano, Hiroyuki ; Ozaki, Yuki ; Motooka, Daisuke ; Mori, Hideto ; Kirita, Yuhei ; Kise, Yoshiaki ; Itoh, Yuzuru ; Matoba, Satoaki ; Aburatani, Hiroyuki ; Yachie, Nozomu ; Karvelis, Tautvydas ; Šikšnys, Virginijus ; Ohmori, Tsukasa ; Hoshino, Atsushi ; Nureki, Osamu
DOI 10.1016/j.cell.2023.08.031
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Is Part of Cell.. Cambridge, MA : Cell Press. 2023, vol. 186, iss. 22, p. 4920-4935.e23.. ISSN 0092-8674. eISSN 1097-4172
Keywords [eng] animal experiments ; CRISPR-Cas ; cryo-EM ; deep mutational scanning ; gene therapy ; genome editing ; iPS cells
Abstract [eng] SpCas9 and AsCas12a are widely utilized as genome-editing tools in human cells. However, their relatively large size poses a limitation for delivery by cargo-size-limited adeno-associated virus (AAV) vectors. The type V-F Cas12f from Acidibacillus sulfuroxidans is exceptionally compact (422 amino acids) and has been harnessed as a compact genome-editing tool. Here, we developed an approach, combining deep mutational scanning and structure-informed design, to successfully generate two AsCas12f activity-enhanced (enAsCas12f) variants. Remarkably, the enAsCas12f variants exhibited genome-editing activities in human cells comparable with those of SpCas9 and AsCas12a. The cryoelectron microscopy (cryo-EM) structures revealed that the mutations stabilize the dimer formation and reinforce interactions with nucleic acids to enhance their DNA cleavage activities. Moreover, enAsCas12f packaged with partner genes in an all-in-one AAV vector exhibited efficient knock-in/knock-out activities and transcriptional activation in mice. Taken together, enAsCas12f variants could offer a minimal genome-editing platform for in vivo gene therapy.
Published Cambridge, MA : Cell Press
Type Journal article
Language English
Publication date 2023
CC license CC license description